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I had some big performance problems after installing Lion with Aperture 3. I noticed also that this was reported on the Apple support blogs and elsewhere. My fix was a re-install of Lion which I ran overnight. 

 

After the second install all of the performance and memory leak type problems went way. Longer description of fix here: 

 

http://rashbre2.blogspot.com/2011/08/fixing-aperture-performance-by...

 

Posted in case anyone else affected. 

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I too experienced issues in Aperture 3 after the Lion upgrade.  My problem ended up being video files that were mixed in with certain libraries in Aperture.  This took days of trouble shooting but once I located and removed all 36 video clips from the Aperture library all was perfectly fine.  I was able to boot Aperture while holding the Shift key and did not experience the issue, this led me to the video files as a potential culprit.  I did not reinstall Lion and so far Aperture is working perfectly (without any videos).

 

Hope tis helps someone.

Interesting, I also have a few videos in Aperture although since the (overnight0 reinstall of Lion all seems to be OK.

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